tcga-downloader/CHANGELOG.md

Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

Added

• Logging system with configurable verbosity and file output
• Enhanced error handling with automatic retry logic for API queries
• Data statistics feature showing file count, total size, and data type breakdown
• Additional query filters: sample type and platform
• Verbose mode (--verbose) for detailed logging
• Log file output option (--log-file)
• Pre-commit hooks configuration for code quality
• CI/CD pipeline with GitHub Actions
• Code formatting with Black
• Linting with Ruff
• Type checking with MyPy
• Code coverage with pytest-cov
• Comprehensive documentation (README, CONTRIBUTING, CHANGELOG)
• Extended test suite with coverage for new features

Changed

• Improved error messages with actionable guidance
• Enhanced download error handling with detailed diagnostics
• Better logging throughout all modules

Fixed

• Corrected TSV manifest size parsing (convert to int)
• Improved error handling for missing gdc-client

0.1.0 - 2024-01-XX

Added

• Initial release
• Query TCGA files by project and data type
• Generate manifests in TSV or JSON format
• Download files via gdc-client
• CLI with query, download, and run commands
• Basic test suite
• Project structure and documentation